An Introduction to HPC Carpentry

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.logo[
  ![High Performance Carpentry Banner](fig/hpc-carpentry.svg)
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# Sprint: [HPC Workflows with Snakemake](https://github.com/carpentries-incubator/hpc-workflows)

Alan O'Cais (CECAM)

<small><em>on behalf of the</em></small>  
HPC<sup>❦</sup> Carpentry<sup>‡</sup> Community

[hpc-carpentry.org][hpc-web]

<small>
  <sup>❦</sup> HPC = High-Performance Computing  
  <sup>‡</sup> Not an offical Carpentries lesson program  
  <em>Logo design:</em> Mumtahinah Sristy (BRAC)
</small>

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Greetings, CarpentryCon!

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# Reminder: Code of Conduct

We use [The Carpentries Code of Conduct](https://docs.carpentries.org/topic_folders/policies/code-of-conduct.html)

* Use welcoming and inclusive language
* Be respectful of different viewpoints and experiences
* Gracefully accept constructive criticism
* Focus on what is best for the community
* Show courtesy and respect towards other community members

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Sprint carries on over a couple of weeks and (hopefully!) involves lots of
interaction...so this is important!

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# Goals of the sprint

Lesson specific:
* Create a follow-on lesson from [HPC Intro](https://github.com/carpentries-incubator/hpc-intro)
  that targets workflows
* Rework workflow tasks to be reinforce (and apply) previous lesson
  * Workflow objective will be to generate a scaling plot
* Make the lesson adaptable to multiple sites

General:
* See if sprints are a good model for developing HPC Carpentry lessons

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# Schedule

* Introduction
  * 1 August, 5:00-7:00pm UTC [find your local time](https://www.timeanddate.com/worldclock/fixedtime.html?msg=HPC+Workflows+with+Snakemake&iso=20220801T17&p1=1440&ah=2)
* Check-in
  * 4 August, 6:00-8:00pm UTC [find your local time](https://www.timeanddate.com/worldclock/fixedtime.html?msg=High+Performance+Workflows&iso=20220804T18&p1=1440&ah=2)
  * 9 August, 5:30-7:30pm UTC [find your local time](https://www.timeanddate.com/worldclock/fixedtime.html?msg=HPC+Workflows+3&iso=20220809T1730&p1=1440&ah=2)
  * 11 August, 5:30-6:30pm UTC [find your local time](https://www.timeanddate.com/worldclock/fixedtime.html?msg=HPC+Workflows+4&iso=20220812T1630&p1=1440&ah=2)

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# Communications

* Chat
  * Use the [#hpc-carpentry](https://swcarpentry.slack.com/archives/CEXAZR52T) channel in The Carpentries Slack
    * If you don't have access to The Carpentries Slack [sign up here](https://swc-slack-invite.herokuapp.com/)
  * Make use of "Reply in thread" to avoid flooding the channel

* Note taking
  * General HackMD pad for note taking at https://codimd.carpentries.org/hXwa7RTnRSirzvzwTDfeJw 
  * Can link to subpads if certain contributions require more extensive notes

* Checking-in
  * Give brief update on contribution status during the check-in meetings

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# Contributing and Reviewing

Contributing
* We use [GitHub flow](https://docs.github.com/en/get-started/quickstart/github-flow)
* Mark PRs as draft until you believe they are ready for review
  * See [here](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/changing-the-stage-of-a-pull-request) for how to update the status on a PR
* If you need help or advice, tag people with their GitHub handle in the PR/issue or ask in the
  Slack channel ([#hpc-carpentry](https://swcarpentry.slack.com/archives/CEXAZR52T))

Reviewing
* Anyone is welcome to review the PR of someone else, just remember our CoC!
* Will try to review PRs from the sprint quickly so we can make progress

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# Selecting what to work on

* Issues have been opened that outline potential contributions
  * See [list of issues with `hackathon` label](https://github.com/carpentries-incubator/hpc-workflows/issues?q=is%3Aissue+is%3Aopen+label%3Ahackathon)
* Some issues may be more accessible to those with certain skills
  * (HPC) Software installation [#3](https://github.com/carpentries-incubator/hpc-workflows/issues/3)
  * Python [#6](https://github.com/carpentries-incubator/hpc-workflows/issues/6), [#13](https://github.com/carpentries-incubator/hpc-workflows/issues/13)
  * Snakemake [#12](https://github.com/carpentries-incubator/hpc-workflows/issues/12)
  * familiarity with Carpentries lesson template [#11](https://github.com/carpentries-incubator/hpc-workflows/issues/11)
  * GitHub Actions [#8](https://github.com/carpentries-incubator/hpc-workflows/issues/8)

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<div class="hpc-head">
  <img src="fig/hpc-logo.png" alt="HPC Carpentry logo" style="height: 100%;"/>
</div>

# Thank You!

[github.com/hpc-carpentry][hpc-git]

slack: [#hpc-carpentry][swc-slack]

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[hpc-intro]: https://github.com/carpentries-incubator/hpc-intro
[hpc-shell]: https://github.com/hpc-carpentry/hpc-shell
[hpc-workflows]: https://github.com/carpentries-incubator/hpc-workflows

[hpc-parallel]: https://github.com/hpc-carpentry/hpc-parallel-novice
[hpc-lammps]: https://github.com/hpc-carpentry/tuning_lammps
[hpc-chapel]: https://github.com/hpc-carpentry/hpc-chapel

[hpc-martha]: https://github.com/hpc-carpentry/coordination/issues/28

[hpc-web]: https://www.hpc-carpentry.org
[hpc-git]: https://github.com/hpc-carpentry
[hpc-twit]: https://twitter.com/hpccarpentry

[swc-slack]: https://swcarpentry.slack.com/
[shell-novice]: https://github.com/swcarpentry/shell-novice